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Table 3 Summary of model parameters resulting from simulated data

From: Sequencing error correction without a reference genome

 

Simulated data

Error

Position 1

A

b

A → C

1.4E-03

1.8E-04

0.10

A → G

6.8E-04

2.3E-04

0.04

A → T

4.6E-04

4.6E-05

0.15

C → A

3.0E-03

4.7E-04

0.07

C → G

4.3E-04

8.0E-05

0.08

C → T

8.3E-04

2.4E-04

0.06

G → A

4.9E-04

2.0E-04

0.06

G → C

5.3E-04

1.4E-04

0.11

G → T

1.8E-03

2.7E-04

0.14

T → A

4.1E-04

1.2E-04

0.06

T → C

5.9E-04

2.9E-04

0.06

T → G

3.9E-04

4.5E-04

0.02

  1. Probabilities for position 1 and exponents of the fitted exponential curves, A ebx, for positions 2 to 24 for the simulated data set. The corresponding figure is shown in Additional file 3.
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BMC Bioinformatics

ISSN: 1471-2105

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