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Table 3 The number of SNPs annotated to different regions by SNPdat and Annovar

From: Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms

Region

SNPdat

Annovar

Coding

299

299

3 prime UTR

108

105

5 prime UTR

29

28

Intronic

3285

3284

Intergenic

845

845

Misc.

0

5

Total

4566

4566

  1. Misc features include non-coding RNA and splicing. These features were not included in the GTF version of the ensGene annotation file and so SNPdat was unable to identify them as such.
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BMC Bioinformatics

ISSN: 1471-2105

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