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Table 10 Single-end short read alignments using real dataset SRR519953

From: A hybrid short read mapping accelerator

 

# of alignments

Aligned rate

Execution time

Hybrid aligner

1,522,697

80.7%

65 sec

GASSST

1,477,911

78.4%

467 sec

BWA

1,472,773

78.1%

444 sec

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BMC Bioinformatics

ISSN: 1471-2105

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