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Table 12 Paired-end alignment with real dataset

From: A hybrid short read mapping accelerator

 

# of alignments

Aligned rate

Execution time

BWA

3,002,675

79.6%

1037 sec

Hybrid aligner

2,841,262

75.3%

300 sec

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BMC Bioinformatics

ISSN: 1471-2105

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