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Table 2 The number of duplications and the identified alignments for different seed lengths using GASSST

From: A hybrid short read mapping accelerator

Seed length

# of duplications

# of alignments

12 bp

1,260,817

1,076,671

13 bp

504,104

1,049,721

14 bp

217,461

1,029,516

15 bp

124,197

1,028,288

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BMC Bioinformatics

ISSN: 1471-2105

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