Skip to main content

Table 5 Execution time comparison among different thread conditions

From: A hybrid short read mapping accelerator

 

36 bp read data set

76 bp read data set

100 bp read data set

Threads

1

2

4

1

2

4

1

2

4

Hybrid aligner

16 s

11 s

11 s

30s

21 s

21 s

38 s

28 s

28 s

GASSST

110 s

58 s

42 s

216 s

116 s

78 s

268 s

145 s

96 s

BWA

64 s

34 s

22 s

150 s

88 s

54 s

214 s

104 s

71 s

Speedup1

6.8

5.3

3.8

7.2

5.5

3.7

7.1

5.2

3.4

Speedup2

4

3.1

2.0

5.0

4.2

2.6

5.7

3.7

2.5

  1. (Note: speedup1 indicates the runtime comparison between the hybrid system and GASSST; speedup2 indicates the execution time comparison between the hybrid system and BWA).
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us