Table 2 Comparison of oligo design programs
Program | Total oligos | Bad oligos | Good oligos | Specificity (%) | Coverage(%) | Time (s) | Speed (KB/s) |
|---|---|---|---|---|---|---|---|
ArrayOligoSelector | 365,571 | 289,103 | 76,468 | 20.92 | 32.38 | 249,467 | 2.28 |
OligoArray | 223,103 | 172,817 | 50,286 | 22.54 | 21.30 | 1,568,961 | 0.36 |
OligoPicker | 269,971 | 54,715 | 215,256 | 79.73 | 91.16 | 98,343 | 5.77 |
OligoWiz | 376,965 | 281,080 | 95,885 | 25.44 | 40.61 | 762,536 | 0.74 |
PICKY | 166,126 | 10,697 | 155,429 | 93.56 | 65.83 | 4,745 | 119.64 |
YODA | 225,332 | 4,190 | 221,142 | 98.14 | 93.66 | 1,577,385 | 0.36 |
BOND | 236,111 | 0 | 236,111 | 100.00 | 100.00 | 862 | 658.59 |