An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets

Table 10 Characteristics of mined sequential patterns in GSE11342 (maxTC = variable, minSupp = 95% and minTSupp = 100%)

	28d	31d	34d	37d	40d	43d	46d	49d	52d	55d	58d	61d	64d	≥ 67d
# of CTGR-SPs	112	112	120	126	157	165	160	163	163	161	194	194	220	242
# of longest CTGR-SPs	112	112	8	14	45	2	2	2	2	2	28	28	28	28
Maximal length of CTGR-SPs	1	1	3	3	3	4	4	4	4	4	4	4	4	4
# of genes in CTGR-SPs	112	112	119	123	132	132	132	132	132	132	136	135	136	140
# of genes in longest CTGR-SPs	0	0	4	6	14	2	2	2	2	2	3	3	3	3
# of gene pairs in lonest CTGR-SPs	0	0	7	11	42	4	4	4	4	4	21	21	21	21
-Log(p-value)^††	-	-	1.02	0.74	0.40	0	0	0	0	0	1.31	1.31	1.31	1.31

d: # of days of SWS; ††: test longest CTGR-SPs-involved genes in immune response using GO enrichment analysis; -: no p-values.

ISSN: 1471-2105