Skip to main content

Table 12 Characteristics of mined sequential patterns in GSE11342 (SWS = variable, maxTC = ∞ days, minSup p = 95% and minTSupp = 100%)

From: An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets

 

0d

3d

6d

9d

12d

15d

18d

21d

24d

27d

30d

33d

36d

39d

42d

45d

48d

51d

54d

57d

60d

63d

≥ 66d

# of CTGR-SPs

214

211

221

194

154

135

131

127

125

128

125

127

136

157

157

163

163

163

163

187

190

198

217

# of longest CTGR-SPs

28

25

25

82

37

17

17

14

10

13

13

7

10

157

157

163

163

163

163

187

190

198

217

Maximal length of CTGR-SPs

4

4

4

3

3

3

3

3

3

3

2

2

2

1

1

1

1

1

1

1

1

1

1

# of genes in CTGR-SPs

136

134

136

134

127

124

123

121

120

121

119

121

125

132

132

132

132

132

132

136

136

136

136

# of genes in longest CTGR-SPs

3

3

3

15

10

9

9

9

7

8

5

5

4

7

7

7

7

7

7

7

7

7

7

# of gene pairs in lonest CTGR-SPs

21

19

19

59

26

16

16

14

10

12

10

10

12

0

0

0

0

0

0

0

0

0

0

-Log(p-value)††

1.26

1.37

1.37

0.70

0.00

0.00

0.00

0.00

0.86

0.86

0.65

0.53

0.40

-

-

-

-

-

-

-

-

-

-

  1. d: # of days of SWS; ††: test longest CTGR-SPs-involved genes in immune response using GO enrichment analysis; -: no p-values.