An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets

Table 15 Longest CTGR-SP s of GSE11342 (SWS = 3 days, maxT C = ∞ days, minSupp = 95% and minTSupp = 100%)

L₁	L₂	L₃	L₄	Supports
CXCL10+ [23]	IFIT2+ [38]	ZNF710-	FECH+ [39]	95% (19/20)
			BPGM+ [40]	95% (19/20)
			SNCA+ [41]	95% (19/20)
			SELENBP1+ [42]	95% (19/20)
		HBZ+	FECH+ [39]	95% (19/20)
			BPGM+ [40]	95% (19/20)
			SNCA+ [41]	95% (19/20)
			SELENBP1+ [42]	100% (20/20)
			TRIM46+	95% (19/20)
		SELENBP1+ [42]	HBZ+	95% (19/20)
			SELENBP1+ [42]	95% (19/20)
		PPP4R4+	SELENBP1+ [42]	95% (19/20)
IFIT2+ [38]	IFIT2+ [38]	ZNF710-	FECH+ [39]	95% (19/20)
			BPGM+ [40]	95% (19/20)
			SNCA+ [41]	95% (19/20)
			SELENBP1+ [42]	95% (19/20)
		HBZ+	FECH+ [39]	95% (19/20)
			BPGM+ [40]	95% (19/20)
			SNCA+ [41]	95% (19/20)
			SELENBP1+ [42]	100% (20/20)
			TRIM46+	95% (19/20)
		SELENBP1+ [42]	HBZ+	95% (19/20)
			SELENBP1+ [42]	95% (19/20)
		PPP4R4+	SELENBP1+ [42]	95% (19/20)
TNFSF10+ [43]	IFIT2+ [38]	HBZ+	SELENBP1+ [42]	95% (19/20)

[]: hepatitis C-associated genes reported in previous literature; I_n: the nth item in a CTGR-SP; +: expressed genes; -: repressed genes.

ISSN: 1471-2105