Figure 5
The relative quality of the FunFam and different fixed-granularity GeMMA family partitionings obtained for 466 enzyme domain superfamilies in Gene3D. (a) The fraction of superfamilies for which a given method or clustering granularity setting yields or shares the top performance score. (b) Box and whisker plot of the average performance scores (diamonds) attained over all superfamilies with a given method or setting. Note that the maximum observed value (top whisker) can be considerably higher than the others; these putative outlier values are indicated at the top.