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Figure 1 | BMC Bioinformatics

Figure 1

From: Discovering motifs that induce sequencing errors

Figure 1

Aligned reads with strand biased errors. Hypothetical reads of two directions (red: forward; blue: backward) are aligned to a reference genome shown on top. Nucleotides within reads indicate mismatches to the forward reference. Three genome positions with extreme strand bias are marked by arrows. CSE-causing motifs described in [8] (GGC, inverted repeats) and [9] (GGT) are highlighted in yellow. Created with the Integrative Genomics Viewer (IGV) [18].

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BMC Bioinformatics

ISSN: 1471-2105

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