Skip to main content

Table 5 Genomic features of conserved regions overlapping mouse CNS specific lncRNAs

From: Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements

ID

Genomic feature overlap in Zebrafish (Aligned region of phastCons element)

Genomic feature overlap in Mouse (Whole mouse lncRNA)

 

UTR

Exon

Intron

EST

Other

UTR

Exon

Intron

EST

Other

334146

yes

yes

-

yes

-

yes

-

-

yes

lincRNA

(Ensembl)

377442

yes

-

-

yes

-

yes

-

-

yes

-

391744

yes

-

-

-

-

yes

-

-

yes

-

414089

yes

-

-

yes

-

-

-

-

yes

-

759212

-

-

yes

 

-

-

-

yes

yes

-

113364

-

-

-

-

-

yes

-

-

-

-

208793

-

-

-

yes

-

yes

-

-

yes

miRNA

268839

-

-

-

-

-

yes

-

yes

yes

-

460295

-

-

-

yes

-

yes

-

-

yes

-

604458

-

-

-

yes

-

-

-

yes

yes

-

  1. The genomic features for each of the 10 conserved phastCons fragments (from the CNS dataset) and their mouse lncRNA homologs. To be noted that while for zebrafish only the region of alignment is considered not the whole phastCons element, in case of mouse the complete lncRNA was used to perform the analysis. Each region is classified in terms of it being overlapped by a UTR, exon or intron of an annotated protein coding gene, or an EST.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us