From: GAM-NGS: genomic assemblies merger for next generation sequencing
Assembler | Ctg num | NG50 (kb) | NG50 corr. (kb) | Assembly size (%) | Chaff size (%) | Unaligned ref (%) | Unaligned asm (%) | Dupl (%) | Comp (%) |
---|---|---|---|---|---|---|---|---|---|
Allpaths-LG | 204 | 42.45 | 34.42 | 99.68 | 0.01 | 0.45 | 0.01 | 0.38 | 0.31 |
MSR-CA | 395 | 22.12 | 19.08 | 97.02 | 0.01 | 3.47 | 0.04 | 1.05 | 0.53 |
Allpaths-LG + MSR-CA | |||||||||
GAM-NGS | 168 | 51.12 | 37.88 | 99.97 | 0.00 | 0.28 | 0.01 | 0.61 | 0.31 |
GAA | 164 | 53.82 | 40.55 | 100.07 | 0.01 | 0.20 | 0.01 | 0.63 | 0.32 |
ZORRO | 216 | 38.87 | 30.64 | 100.41 | 0.03 | 0.36 | 0.02 | 0.43 | 0.48 |
MSR-CA + Allpaths-LG | |||||||||
GAM-NGS | 199 | 49.61 | 37.88 | 97.95 | 0.01 | 3.10 | 0.04 | 1.58 | 0.61 |
GAA | 177 | 54.71 | 40.55 | 99.74 | 0.01 | 1.61 | 0.04 | 1.08 | 0.35 |
ZORRO | 206 | 44.61 | 38.79 | 101.14 | 0.09 | 0.21 | 0.06 | 1.64 | 0.25 |
Bambus2 | 177 | 93.19 | 12.78 | 94.97 | 0.00 | 4.92 | 0.01 | 0.00 | 0.24 |
SOAPdenovo | 202 | 131.68 | 14.34 | 100.29 | 0.44 | 0.76 | 0.01 | 1.30 | 0.46 |
Bambus2 + SOAPdenovo | |||||||||
GAM-NGS | 83 | 149.75 | 14.16 | 98.32 | 0.00 | 3.02 | 0.00 | 1.59 | 0.63 |
GAA | 100 | 194.16 | 14.74 | 98.35 | 0.13 | 2.28 | 0.01 | 0.63 | 0.58 |
ZORRO | 711 | 16.56 | 13.18 | 100.48 | 0.89 | 0.66 | 0.25 | 1.05 | 0.59 |
SOAPdenovo + Bambus2 | |||||||||
GAM-NGS | 177 | 154.47 | 15.17 | 100.41 | 0.42 | 0.82 | 0.01 | 1.67 | 0.48 |
GAA | 174 | 188.18 | 14.54 | 100.35 | 0.44 | 0.76 | 0.01 | 1.38 | 0.48 |
ZORRO | 720 | 16.56 | 12.78 | 100.48 | 0.84 | 0.69 | 0.24 | 1.14 | 0.56 |