Table 6 GAGE statistics (SNPs, indels and misjoins) on Rhodobacter sphaeroides.
From: GAM-NGS: genomic assemblies merger for next generation sequencing
Assembler | SNPs | Indels < 5 bp | Indels ≥ 5 bp | Misjoins | Inv | Reloc |
|---|---|---|---|---|---|---|
Allpaths-LG | 218 | 150 | 37 | 6 | 0 | 6 |
MSR-CA | 807 | 179 | 32 | 9 | 1 | 8 |
Allpaths-LG + MSR-CA | ||||||
GAM-NGS | 250 | 157 | 44 | 5 | 0 | 5 |
GAA | 345 | 162 | 48 | 5 | 0 | 5 |
ZORRO | 263 | 153 | 35 | 7 | 0 | 7 |
MSR-CA + Allpaths-LG | ||||||
GAM-NGS | 842 | 198 | 46 | 10 | 1 | 9 |
GAA | 802 | 187 | 49 | 10 | 1 | 9 |
ZORRO | 928 | 215 | 29 | 7 | 0 | 7 |
Bambus2 | 189 | 149 | 363 | 5 | 0 | 5 |
SOAPdenovo | 534 | 155 | 404 | 8 | 0 | 8 |
Bambus2 + SOAPdenovo | ||||||
GAM-NGS | 431 | 173 | 406 | 10 | 0 | 10 |
GAA | 581 | 177 | 404 | 10 | 0 | 10 |
ZORRO | 546 | 196 | 84 | 8 | 0 | 8 |
SOAPdenovo+ Bambus2 | ||||||
GAM-NGS | 534 | 153 | 393 | 8 | 0 | 8 |
GAA | 532 | 155 | 407 | 8 | 0 | 8 |
ZORRO | 513 | 175 | 111 | 9 | 0 | 9 |