From: Computational approaches for isoform detection and estimation: good and bad news
Name
Version
Modes of action
Link
Publication
TopHat2
2.07
CA/IA, no annotation
http://tophat.cbcb.umd.edu/
[28, 29]
RSEM
1.2.3
1
http://deweylab.biostat.wisc.edu/rsem/
[19, 35]
Cufflinks
2.0.2
1,2,3
http://cufflinks.cbcb.umd.edu/
[20]
SLIDE
May 7th, 2012
1,2
https://sites.google.com/site/jingyijli/
[21]
CEM
0.9.1
http://alumni.cs.ucr.edu/~liw/cem.html
[23]
iReckon
1.0.7
2
http://compbio.cs.toronto.edu/ireckon/
[22]