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Table 2 Number of consistent clusters with TIGRFAMs models ( N TIGR 1to1 )

From: Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score

COG03 dataset

FAMILY210 dataset

Method

N TIGR 1to1

Method

N TIGR 1to1

COG

1107

eggNOG

1149

DomClust

1235 (1.12)

DomClust

1375 (1.20)

DomRefine

1272 (1.15)

DomRefine

1448 (1.26)

TIGRFAMs*

3576

TIGRFAMs*

3924

  1. The ratio of N TIGR 1to1 to COG or eggNOG is shown in parenthesis. *Number of TIGRFAMs models with hits in the corresponding dataset, which is the possible maximum number of N TIGR 1to1.
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BMC Bioinformatics

ISSN: 1471-2105

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