From: Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators
Method | TP | FP | TN | FN | Sp (%) | Re (%) | Pr (%) | F |
---|---|---|---|---|---|---|---|---|
PSOPIA (θ = 0.293, the higheset F) | 143 | 5,026 | 1,766,423 | 4,152 | 99.72 | 3.33 | 2.77 | 0.030 |
PSOPIA (θ = 0.670) | 24 | 151 | 1,771,298 | 4,271 | 99.99 | 0.56 | 13.71 | 0.012 |
PSOPIA (θ = 0.890) | 4 | 31 | 1,771,418 | 4,291 | 99.99 | 0.09 | 11.43 | 0.002 |
(I) BIPS, only filtered by the template interactions | ||||||||
(A) Template: Taxonomy ID = 9609 (human) | 19 | 680 | 1,765,404 | 3,710 | 99.96 | 0.51 | 2.72 | 0.009 |
(B) Template: all species | 19 | 833 | 1,765,005 | 3,705 | 99.95 | 0.51 | 2.23 | 0.008 |
(II) BIPS, filtered by known DDIs (iPfam or 3DID) | ||||||||
(A) Template: Taxonomy ID = 9609 (human) | 5 | 60 | 1,771,096 | 4,261 | 99.99 | 0.12 | 7,69 | 0.002 |
(B) Template: all species | 5 | 72 | 1,771,059 | 4,256 | 99.99 | 0.12 | 6.49 | 0.002 |
(III) BIPS, filtered by known DDIs (iPfam or 3DID) and GO; biological process, cellular component or molecular function | ||||||||
(A) Template: Taxonomy ID = 9609 (human) | 3 | 47 | 1,771,245 | 4,284 | 99.99 | 0.07 | 6.00 | 0.001 |
(B) Template: all species | 3 | 56 | 1,771,216 | 4,280 | 99.99 | 0.07 | 5.08 | 0.001 |