Type | Method | CV (A/ B) | A→B | B→A | Mean G-perf | |||
---|---|---|---|---|---|---|---|---|
Se | Sp | Se | Sp | Se | Sp | Test sets | ||
tForwardLd | 0.38/0.63 | 0.80/0.65 | 0.50 | 0.82 | 1.00 | 0.88 | 0.79 | |
From Arijs, 2009 | Accuracy: 0.92/0.91 | 0.25 | 1 | Accuracy: 0.71 | na | |||
All Genes | RF | 0.20/0.82 | 0.88/0.73 | 0.25 | 0.91 | 0.62 | 0.75 | 0.58 |
SVM | 0.52/0.78 | 0.85/0.69 | 0.42 | 0.82 | 0.62 | 0.75 | 0.63 | |
NSC | 0.48/0.78 | 0.80/0.58 | 0.67 | 1.00 | 0.69 | 0.88 | 0.80 | |
tForwardLd | 0.50/0.68 | 0.83/0.62 | 0.67 | 1.00 | 0.88 | 0.69 | 0.80 | |
LDA | 0.43/0.90 | 0.84/0.65 | 0.42 | 0.82 | 0.88 | 0.62 | 0.66 | |
Gene in transcript layer | NSC | 0.60/0.88 | 0.79/0.58 | 0.75 | 0.73 | 0.88 | 0.56 | 0.72 |
RF | 0.28/0.85 | 0.88/0.71 | 0.33 | 0.82 | 0.88 | 0.69 | 0.65 | |
SVM | 0.52/0.77 | 0.86/0.69 | 0.42 | 0.82 | 0.88 | 0.69 | 0.68 | |
CORG + LDA | 0.33/0.73 | 0.68/0.62 | 0.25 | 0.64 | 0.75 | 0.69 | 0.56 | |
CORG + NSC | 0.62/0.90 | 0.78/0.60 | 0.50 | 0.82 | 0.88 | 0.69 | 0.71 | |
UBE downstream genes | Best LDA (MAP3K1) | 0.45/0.98 | 0.78/0.69 | 0.58 | 0.91 | 1.00 | 0.75 | 0.80 |
Best NSC (catof(TLR2)) | 0.85/0.92 | 0.80/0.56 | 0.75 | 1.00 | 1.00 | 0.69 | 0.85 | |
tForwardLd | 0.53/0.82 | 0.75/0.75 | 0.50 | 0.64 | 1.00 | 0.62 | 0.68 | |
LDA | 0.75/0.75 | 0.76/0.75 | 0.50 | 0.73 | 0.88 | 0.56 | 0.65 | |
Backbone values | NSC | 0.98/0.98 | 0.75/0.67 | 0.92 | 0.82 | 1.00 | 0.62 | 0.83 |
SVM | 0.78/0.78 | 0.40/0.77 | 0.91 | 0.50 | 0.69 | 0.88 | 0.73 | |
RF | 0.75/0.82 | 0.62/0.78 | 0.82 | 0.75 | 0.75 | 0.88 | 0.80 |