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Table 2 Run time comparisons of Clinical PathoScope and existing technologies

From: Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

  

Average Run Time (minutes)

Dataset

Target

Clinical PathoScope

RINS

READSCAN

Simulation

Virus

4.5

84.1

193.58

Simulation

Bacteria

13.1

1108.2

PCCL

Virus

6.0

89.1

52.8

TMAdv

Virus

4.4

144.0

78.6

Mummy

Bacteria

25.0

1099

882