Table 3 Gene IDs and names of the immediately downstream genes of the 86 putative A-form promoter elements identified in the JGI 4.2 genome assembly, the associated promoter motif sequence for each hit is shown alongside
From: APTE: identification of indirect read-out A-DNA promoter elements in genomes
Gene ID | Gene name | Motif |
|---|---|---|
ENSXETG00000003537 | plcxd3 | GGGCGG |
ENSXETG00000008410 | c5orf4 | GGGCGG |
ENSXETG00000030719 | unknown1 | GGGCGG |
ENSXETG00000006282 | unknown2 | GGGCGG |
ENSXETG00000003943 | lrsam1 | CCGCCC |
ENSXETG00000027883 | c3orf10 | CCAAT |
ENSXETG00000028111 | unknown3 | CCAAT |
ENSXETG00000016171 | gata2 | CCGCCC |
ENSXETG00000029861 | unknown4 | CCAAT |
ENSXETG00000009337 | gdi3 | CCAAT |
ENSXETG00000012462 | gtf2e1.2 | CCAAT |
ENSXETG00000017744 | XB-GENE-5853280 | CCAAT |
ENSXETG00000004674 | eef1d | CCAAT |
ENSXETG00000004472 | mcts1 | CCAAT |
ENSXETG00000032447 | LOC100488751 | CCAAT |
ENSXETG00000000668 | xkr5 | CCGCCC |
ENSXETG00000033055 | unknown5 | CCAAT |
ENSXETG00000007609 | thrsp | CCAAT |
ENSXETG00000002252 | unknown6 | CCAAT |
ENSXETG00000026459 | ywhaz | TATCA |
ENSXETG00000029162 | unknown7 | TATCA |
ENSXETG00000015053 | gdpd5 | TATCA |
ENSXETG00000009868 | tars | TATCA |
ENSXETG00000010686 | sepn1 | TATCA |
ENSXETG00000016524 | LOC100493317 | TATCT |
ENSXETG00000018194 | fam176a | TATCT |
ENSXETG00000009404 | adipor2 | CCAAT |
ENSXETG00000018026 | sec22a | AGATA |
ENSXETG00000002371 | kif27 | AGATA |
ENSXETG00000010991 | ercc4 | TATCT |
ENSXETG00000025304 | unknown8 | ATTGG |
ENSXETG00000002603 | gas2 | TATCT |
ENSXETG00000023254 | zfp36l2.2 | TATCA |
ENSXETG00000009124 | clcn7 | CCAAT |
ENSXETG00000018965 | crat.1 | CCAAT |
ENSXETG00000027013 | NP_001016033.1 | CCAAT |
ENSXETG00000027419 | a4galt | TATCA |
ENSXETG00000020165 | mkrn2 | CCAAT |
ENSXETG00000029144 | unknown9 | ATTGG |
ENSXETG00000030437 | tnrc6a | ATTGG |
ENSXETG00000018553 | XB-GENE-5960869 | TATCA |
ENSXETG00000016062 | znf184 | GGGCGG |
ENSXETG00000016933 | ehmt1 | ATTGG |
ENSXETG00000014657 | slc25a30 | AGATA |
ENSXETG00000003950 | traf2 | CCGCCC |
ENSXETG00000030164 | NP_001120021.1 | AGATA |
ENSXETG00000030426 | unknown10 | TATCA |
ENSXETG00000022553 | fam120a | ATTGG |
ENSXETG00000007987 | arg2 | AGATA |
ENSXETG00000023393 | osbpl11 | TGATA |
ENSXETG00000017669 | usp21 | AGATA |
ENSXETG00000013130 | magi1 | TATCT |
ENSXETG00000023739 | wrb | CCAAT |
ENSXETG00000007387 | bmi1 | AGATA |
ENSXETG00000016524 | LOC100493317 | ATTGG |
ENSXETG00000013350 | tfg | ATTGG |
ENSXETG00000009412 | unknown11 | TATCT |
ENSXETG00000000267 | ccndx | CCAAT |
ENSXETG00000010533 | piwil2 | ATTGG |
ENSXETG00000007609 | thrsp | TGATA |
ENSXETG00000027421 | HIST1H4G | TGATA |
ENSXETG00000014657 | slc25a30 | ATTGG |
ENSXETG00000014963 | ctdsp1 | TGATA |
ENSXETG00000019650 | myh11 | AGATA |
ENSXETG00000018194 | fam176a | TATCT |
ENSXETG00000029977 | LOC100495404 | ATTGG |
ENSXETG00000008526 | LOC100495179 | GGGCGG |
ENSXETG00000033908 | UBE2U | AGATA |
ENSXETG00000032885 | P5F13_XENTR | ATTGG |
ENSXETG00000019263 | pdss2 | CCAAT |
ENSXETG00000008969 | rad51l3 | TATCA |
ENSXETG00000022325 | unknown12 | TATCA |
ENSXETG00000020057 | utp6 | CCAAT |
ENSXETG00000007609 | thrsp | TATCT |
ENSXETG00000013463 | zmynd12 | ATTGG |
ENSXETG00000015404 | shc1 | TATCT |
ENSXETG00000027433 | otop2 | ATTGG |
ENSXETG00000021081 | sgcg | GGGCGG |
ENSXETG00000006922 | ss18 | TATCA |
ENSXETG00000033607 | asxl1 | CCAAT |
ENSXETG00000023477 | hdhd3 | ATTGG |
ENSXETG00000003248 | strada | TGATA |
ENSXETG00000033920 | F166B_XENTR | CCGCCC |
ENSXETG00000010684 | dnajc19 | TGATA |
ENSXETG00000027998 | prss8 | CCGCCC |
ENSXETG00000010250 | chrnb3 | TGATA |