From: The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again
ISA Configuration File | ISA measurement | BiocViews | ISA technology | BiocViews |
---|---|---|---|---|
cellcount_flowcytometry | cell counting | flow cytometry | FlowCytometry | |
cellsorting_flowcyt | cell sorting | flow cytometry | FlowCytometry | |
clinical_chemistry | clinical chemistry analysis | |||
copynumvariation_micro | copy number variation profiling | CopyNumberVariants | DNA microarray | Microarray, aCGH |
dnamethylation_micro | DNA methylation profiling | DNAMethylation | DNA microarray | Microarray, ChIPchip, CpGIsland, Methylseq |
dnamethylation_seq | DNA methylation profiling | DNAMethylation | nucleotide sequencing | Sequencing, ChIPseq, CpGIsland, Methylseq |
envgen survey_seq | environmental gene survey | nucleotide sequencing | Sequencing | |
genome_seq | genome sequencing | nucleotide sequencing | Sequencing | |
hematology | hematology | |||
heterozygosity_micro | loss of heterozygosity profiling | SNP, CopyNumber Variants | DNA microarray | Microarray |
histology | histology | |||
histonemodification_seq | histone modification profiling | Regulation | nucleotide sequencing | Sequencing, ChIPseq |
metaboliteprofiling_ms | metabolite profiling | Metabolomics | mass spectrometry | MassSpectrometry |
metaboliteprofiling_nmr | metabolite profiling | Metabolomics | NMR spectroscopy | |
metagenome_seq | metagenome sequencing | nucleotide sequencing | Sequencing | |
ppi_detection_micro | protein-protein interaction detection | protein microarray | Microarray | |
protein_dna_binding_ident_micro | protein-DNA binding site identification | Regulation | DNA microarray | Microarray, ChIPchip |
protein_dna_binding_ident_seq | protein-DNA binding site identification | Regulation | nucleotide sequencing | Sequencing, ChIPseq |
protein expression_ge | protein expression profiling | Proteomics | gel electrophoresis | |
protein expression_micro | protein expression profiling | Proteomics | protein microarray | Microarray |
protein expression_ms | protein expression profiling | Proteomics | mass spectrometry | MassSpectrometry, Proteomics |
proteinident_ms | protein identification | mass spectrometry | MassSpectrometry, Proteomics | |
snpanalysis_micro | SNP analysis | SNP | DNA microarray | Microarray, GeneticVariability |
studySample | ||||
tfbsident_micro | transcription factor binding site identification | Regulation | DNA microarray | Microarray, ChIPchip |
tfbsident_seq | transcription factor binding site identification | Regulation | nucleotide sequencing | Sequencing, ChIPseq |
transcription_micro | transcription profiling | Transcription, GeneExpression | DNA microarray | Microarray, DifferentialExpression, ExonArray |
transcription_rtpcr | transcription profiling | Transcription, GeneExpression, DifferentialExpression | real time PCR | qPCR |
transcription_seq | transcription profiling | Transcription, GeneExpression | nucleotide sequencing | Sequencing, DifferentialExpression, RNAseq |