Table 2 Results of MT applied to 3 NGS short-read alignment programs ran on the paired-end and single end sequencing reads of HapMap sample NA12872.
MRs | BWA | BOWTIE | BOWTIE2 |
|---|---|---|---|
Paired-end sequencing reads | |||
MR1 | F | Â | Â |
MR2 | F | F | F |
MR3 | F | Â | Â |
MR4 | F | Â | Â |
MR5 | F | F | F |
MR6 | Â | Â | Â |
MR7 | F | Â | Â |
MR8 | Â | F | F |
MR9 | F | Â | F |
Single-end sequencing reads | |||
MR1 | F | Â | Â |
MR2 | F | F | F |
MR3 | F | Â | Â |
MR4 | Â | Â | Â |
MR5 | F | F | F |
MR6 | Â | Â | Â |
MR7 | Â | Â | Â |
MR8 | Â | F | F |
MR9 | F | Â | F |