Table 4 Q-value, co-expression and physical interaction score for different modules from different datasets
From: Reconstruction of gene co-expression network from microarray data using local expression patterns
Dataset | Module No | GO Annotation | Q Value | Co-expression (%) | Physical Interaction (%) |
|---|---|---|---|---|---|
| Â | 1 | cytosolic ribosome | 1.11E-47 | 74.71 | 7.24 |
| Â | 2 | nucleolus | 2.32E-30 | 72.46 | 8.96 |
Sporulation | 3 | sporulation | 9.87E-20 | 96.96 | 0 |
| Â | 4 | DNA replication preinitiation complex | 2.92E-09 | 3.07 | 95.08 |
| Â | 1 | cytosolic ribosome | 2.16E-130 | 69.1 | 3.56 |
Yeast KY | 2 | structural constituent of ribosome | 2.64E-126 | 69.1 | 3.56 |
| Â | 3 | DNA-dependent | 2.38E-27 | 65.05 | 8.08 |
| Â | Â | DNA replication | Â | Â | Â |
| Â | 1 | mitochondrial inner membrane | 8.29E-07 | 68.5 | 5.41 |
| Â | 2 | oxidoreductase activity | 3.29E-02 | 100 | Â |
GDS3702 | 3 | aging regulation of | 1.55E-01 | 100 | Â |
| Â | 4 | lipid catabolic process | 1.40E-03 | 100 | Â |
| Â | 5 | iron-sulfur cluster binding | 5.51E-03 | 43.75 | 9.72 |
| Â | 1 | vacuolar proton-transporting | 4.67E-16 | 27.59 | 32.75 |
GDS958 | Â | V-type ATPase complex | Â | Â | Â |
| Â | 2 | cell cortex | 5.01E-03 | 27.59 | 32.75 |
| Â | 1 | negative regulation of cellular process | 2.19E-04 | 29.41 | 29.41 |
Thaliana | 2 | response to wounding | 1.36E-08 | 92.48 | 5.63 |
| Â | 3 | receptor binding | 2.49E-03 | 29.41 | 29.41 |