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Table 2 Running time (seconds) of different GPU algorithms

From: Multicore and GPU algorithms for Nussinov RNA folding

n

Ours 1

Ours 2

[12]

OursR

Ratio 1

Ratio 2

2000

0.1

0.1

0.3

0.1

3.0

1.0

6000

0.6

0.7

4.0

0.8

6.7

1.3

10000

1.9

2.2

16.4

3.2

8.6

1.7

14000

4.5

5.1

43.0

7.9

9.6

1.8

18000

8.8

9.9

89.5

16.0

10.2

1.8

22000

15.1

16.9

161.7

28.2

10.7

1.9

26000

23.9

26.7

266.3

45.8

11.1

1.9

37000

-

71.5

-

-

-

-