From: CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing
dataset type | ID | target†| # Total reads | # Refs‡ | Fragment length§ | Read length | Overlap length | Simulator (error model) or sequencer used | Source |
---|---|---|---|---|---|---|---|---|---|
Simulated | A4 | V5 | 1,000,000 | 23 | 160-190 | 100 | 10-40 | GemSIM (v4#) | |
 | A5 | V5 | 1,000,000 | 23 | 160-190 | 100 | 10-40 | GemSIM (v5b) | |
 | S4 | V5 | 1,000,000 | 1 | 160 | 100 | 40 | GemSIM (v4#) | |
 | S5 | V5 | 1,000,000 | 1 | 160 | 100 | 40 | GemSIM (v5b) | |
Real | C1 | V3 | 716,366 | 9 | 169-195 | 125 | 55-81 | Illumina GAIIx | [21] |
 | C2 | V3 | 1,350,602 | 9 | 169-195 | 125 | 55-81 | Illumina GAIIx | [21] |
 | C3 | V3 | 673,845 | 1 | 198 | 108 | 18 | Illumina GAIIx | [10] |