From: Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013
Event | TEES-2.1 | NaCTeM | NCBI | RelAgent | UET-NII | ISI |
---|---|---|---|---|---|---|
  DEVELOPMENT | 71.43 | 64.77 | 67.33 | 66.31 | 61.72 | 53.66 |
  BLOOD VESSEL DEVELOPM | 85.28 | 78.82 | 81.92 | 79.60 | 21.49 | 13.56 |
  GROWTH | 75.97 | 59.85 | 66.67 | 76.92 | 70.87 | 65.52 |
  DEATH | 81.74 | 73.17 | 74.07 | 64.71 | 77.78 | 63.16 |
  CELL DEATH | 73.30 | 75.18 | 78.05 | 66.98 | 25.17 | 7.35 |
  CELL PROLIFERATION | 80.00 | 78.33 | 72.73 | 64.39 | 71.43 | 57.40 |
  CELL DIVISION | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
  CELL DIFFERENTIATION | 56.34 | 48.48 | 48.98 | 54.55 | 59.26 | 24.14 |
  REMODELING | 30.00 | 22.22 | 21.05 | 40.00 | 20.00 | 23.53 |
  REPRODUCTION | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
Anatomical total | 77.20 | 71.31 | 73.68 | 70.82 | 50.04 | 38.86 |
  MUTATION | 38.00 | 41.05 | 25.11 | 27.36 | 27.91 | 9.52 |
  CARCINOGENESIS | 77.94 | 72.18 | 67.14 | 64.12 | 35.96 | 24.72 |
  CELL TRANSFORMATION | 81.56 | 82.54 | 71.13 | 67.07 | 57.14 | 32.39 |
  BREAKDOWN | 76.74 | 70.13 | 76.54 | 42.42 | 58.67 | 50.70 |
  METASTASIS | 70.91 | 51.05 | 52.69 | 47.79 | 56.41 | 26.20 |
  INFECTION | 69.57 | 76.92 | 69.23 | 33.33 | 11.76 | 0.00 |
Pathological total | 67.51 | 59.78 | 54.19 | 48.14 | 46.90 | 25.17 |
  METABOLISM | 83.87 | 70.27 | 74.29 | 80.00 | 68.75 | 71.43 |
  SYNTHESIS | 78.26 | 71.11 | 78.26 | 53.57 | 64.71 | 48.65 |
  CATABOLISM | 63.64 | 36.36 | 38.10 | 23.08 | 20.00 | 36.36 |
  GLYCOLYSIS | 0.00 | 100.00 | 95.45 | 97.78 | 0.00 | 0.00 |
  AMINO ACID CATABOLISM | 0.00 | 66.67 | 66.67 | 66.67 | 0.00 | 0.00 |
  GENE EXPRESSION | 78.21 | 79.96 | 73.69 | 69.45 | 58.01 | 53.28 |
  TRANSCRIPTION | 37.33 | 42.86 | 51.55 | 28.12 | 32.00 | 20.93 |
  TRANSLATION | 40.00 | 22.22 | 0.00 | 0.00 | 0.00 | 0.00 |
  PROTEIN PROCESSING | 100.00 | 100.00 | 100.00 | 0.00 | 100.00 | 100.00 |
  ACETYLATION | 100.00 | 100.00 | 66.67 | 100.00 | 66.67 | 66.67 |
  GLYCOSYLATION | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
  PHOSPHORYLATION | 63.33 | 70.37 | 53.12 | 64.15 | 58.33 | 50.00 |
  UBIQUITINATION | 100.00 | 100.00 | 0.00 | 100.00 | 0.00 | 100.00 |
  DEPHOSPHORYLATION | 0.00 | 80.00 | 100.00 | 100.00 | 0.00 | 0.00 |
  DNA METHYLATION | 66.67 | 66.67 | 30.30 | 42.11 | 32.43 | 33.33 |
  DNA DEMETHYLATION | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
  PATHWAY | 71.30 | 59.07 | 51.14 | 34.29 | 18.31 | 35.64 |
Molecular total | 72.60 | 72.77 | 67.33 | 60.72 | 49.35 | 46.70 |
  BINDING | 45.35 | 43.93 | 37.89 | 32.69 | 33.94 | 11.92 |
  DISSOCIATION | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
  LOCALIZATION | 54.83 | 57.20 | 47.58 | 45.22 | 44.94 | 35.94 |
General total | 52.20 | 53.08 | 44.70 | 40.89 | 41.76 | 29.59 |
  REGULATION | 32.66 | 28.73 | 14.19 | 26.48 | 5.51 | 4.57 |
  POSITIVE REGULATION | 45.89 | 44.18 | 34.70 | 38.40 | 13.00 | 12.33 |
  NEGATIVE REGULATION | 47.79 | 43.17 | 33.20 | 40.47 | 10.30 | 12.16 |
Regulation total | 43.08 | 39.79 | 29.21 | 35.58 | 10.30 | 10.29 |
  PLANNED PROCESS | 39.43 | 40.51 | 34.28 | 28.57 | 22.74 | 21.22 |
Sub-total | 56.75 | 53.50 | 48.56 | 46.37 | 31.72 | 25.90 |
  NEGATION | 40.00 | 29.55 | 0.00 | 34.64 | 0.00 | 0.00 |
  SPECULATION | 27.14 | 30.35 | 0.00 | 25.90 | 0.00 | 0.00 |
Modification total | 34.66 | 29.95 | 0.00 | 30.88 | 0.00 | 0.00 |
Total | 55.41 | 52.09 | 46.38 | 45.32 | 29.94 | 24.47 |