Table 1 Details on the second dataset.
Genome | Reads library | Assembly tool | Mapping tool |
|---|---|---|---|
staphylo | short jump library (from GAGE [32]) | velvet [33] | bwa [30] |
ecoli | Illumina reads library SRR001665 | velvet | bowtie [34] |
ypco92 | simulated with wgsim | minia [35] | bwa |
wolbachia | simulated with toyseq for the Variathon experiment [36] | minia | bwa |
arabido | Illumina reads library SRR616966 | velvet | bowtie |