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Table 3 Comparison of SpliceJumper, TopHat2 and MapSplice2 on simulated Test2 dataset when the slack value is 8.

From: SpliceJumper: a classification-based approach for calling splicing junctions from RNA-seq data

Tools

False positive

False negative

True positive

Precision

Recall

F-value

SpliceJumper

334

969

14,769

0.9779

0.9384

0.9578

TopHat2

717

1,784

13,954

0.9511

0.8866

0.9178

MapSplice2

358

1,151

14,587

0.9760

0.9269

0.9508

  1. False positive: the number of called out junctions that are actually false ones. False negative: the number of not called out junctions that are actually true ones. True positive: the number of called out junctions that are actually true ones.
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BMC Bioinformatics

ISSN: 1471-2105

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