Figure 3From: Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read dataCollecting partially matching read fragments and their extensions. (a) regions A and B (projections of a two-dimensional breakpoint region along each dimension); (b) read fragments exactly matching a query in region A; (c) leftward extensions from the read fragments; and (d) comparison of an extension with each of regions A and B.Back to article page