RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited – bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure

Table 2 Summary of the fold recognition analysis for RsmD-CTD.

Model number	Pcons score	Threading server reporting the model	PDB ace. #	PDB entry description
1	6.092	FFAS	1dus	Mj0882
2	5.856	INBGU	1dus	Mj0882
3	5.43	3DPSSM	1dus	Mj0882
4	5.132	SAM-T99	1dus	Mj0882
5	4.893	mGENTHREADER	1dus	Mj0882
6	4.171	PDB-Blast	1dus	Mj0882
7	3.544	FUGUE	1dus	Mj0882
8	2.907	FFAS	2adm	DNA:m6A MTase
9	2.906	SAM-T99	1f31	Arg MTase Prmt3
10	2.874	SAM-T99	1g6q	Arg MTase Hmt1

Hits to the Mj0882 structure are shown in bold. Comprehensive structure prediction results are available at the URL: http://bioinfo.pl/meta/target.pl?id=3971

ISSN: 1471-2105