RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited – bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure

Table 3 Summary of the fold recognition analysis for RsmC-NTD.

Model number	Pcons score	Threading server reporting the model	PDB ace. #	PDB entry description
1	3.615	INBGU	1DUS	Mj0882
2	3.576	FUGUE	1DUS	Mj0882
3	3.266	FFAS	1DUS	Mj0882
4	3.237	SAM-T99	1DUS	Mj0882
5	3.225	3DPSSM	1DUS	Mj0882
6	2.624	mGENTHREADER	1DUS	Mj0882
7	2.091	3DPSSM	1EIZ	RNA:ribose O-MTase
8	1.812	SAM-T99	1BHJ	glycine N-MTase
9	1.802	mGENTHREADER	1DL5	protein isoAsp-O-MTase
10	1.673	SAM-T99	1G6Q	Arg MTase Hmt1

Hits to the Mj0882 structure are shown in bold. Comprehensive structure prediction results are available at the URL: http://bioinfo.pl/meta/target.pl?id=3974

ISSN: 1471-2105