RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited – bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure

Table 4 Summary of the fold recognition analysis for RsmD-NTD.

Model number	Pcons score	Threading server reporting the model	PDB ace. #	PDB entry description
1	3.805	FUGUE	1DUS	Mj0882
2	3.573	INBGU	1DUS	Mj0882
3	3.379	FFAS	1DUS	Mj0882
4	3.242	3DPSSM	1DUS	Mj0882
5	2.687	mGENTHREADER	1DUS	Mj0882
6	2.262	SAM-T99	1DUS	Mj0882
7	1.864	SAM-T99 1	1F3L	Arg MTase Pmt3
8	1.587	FFAS	1G6Q	Arg MTase Hmt1
9	1.51	INBGU	1VID	catechol O-MTase
10	1.426	FFAS	1D2H	glycine N-MTase

Hits to the Mj0882 structure are shown in bold. Comprehensive structure prediction results are available at the URL: http://bioinfo.pl/meta/target.pl?id=3970

ISSN: 1471-2105