RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited – bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure

Table 5 Summary of the fold recognition analysis for YbiN.

Model number	Pcons score	Threading server reporting the model	PDB ace. #	PDB entry description
1	3.406	FFAS	1DUS	Mj0882
2	3.267	3DPSSM	1DUS	Mj0882
3	3.083	SAM-T99	1DUS	Mj0882
4	2.618	mGENTHREADER	1DUS	Mj0882
5	2.552	PDB-Blast	1G6Q	Arg MTase Hmt1
6	2.547	INBGU	1DUS	Mj0882
7	2.481	PDB-Blast	1DL5	protein isoAsp-O-MTase
8	2.467	PDB-Blast	1F3L	Arg MTase Pmt3
9	2.462	FFAS	1G6Q	Arg MTase Hmt1
10	2.4	PDB-Blast	1G6Q	Arg MTase Hmt1

Hits to the Mj0882 structure are shown in bold. Comprehensive structure prediction results are available at the URL: http://bioinfo.pl/meta/target.pl?id=3965

ISSN: 1471-2105