Figure 10
From: RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
A phylogenetic tree for O-methyltransferases produced by RIO This tree is based on the Pfam alignment Methyltransf_2 (PF00891). It has been constructed in the same manner as the tree in Figure 8. (TOBAC: Nicotiana tabacum, ARATH: Arabidopsis thaliana, MAIZE: Zea mays, HORVU: Hordeum vulgare, WHEAT: Triticum aestivum, PEA: Pisum sativum, RHOSH: Rhodobacter sphaeroides, RHOCA: Rhodobacter capsulatus, BOVIN: Bos taurus, CHICK: Gallus gallus, RAT: Rattus norvegicus, MYCTU: Mycobacterium tuberculosis.). The A. thaliana query sequence F16P17_38 is labeled with Q. The bootstrap orthology values for potential orthologs are indicated in brackets (the brightness of the green color is proportional to this value). The apparent trifurcation at the root is caused by a branch length of 0.0 (the bacterial hydroxyneurosporene methyltransferases subtree and the plant O-methyltransferases subtree are connected by a speciation event). Inferred gene duplication are indicated by circles. According to this tree, F16P17_38 has orthologs only in bacteria.