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Figure 1 | BMC Bioinformatics

Figure 1

From: A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

Figure 1

An example RNA sequence family. Top: a toy multiple alignment of three sequences, with 28 total columns, 24 of which will be modeled as consensus positions. The [structure] line annotates the consensus secondary structure: > and < symbols mark base pairs, x's mark consensus single stranded positions, and .'s mark "insert" columns that will not be considered part of the consensus model. Bottom: the secondary structure of the "human" sequence.

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BMC Bioinformatics

ISSN: 1471-2105

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