Table 16 Maximum accuracy achievable over all methods on each family. AMPS (Opt): results for AMPS with BLOSUM75/10 parameters. AMPS (Max): result of taking the most accurate alignment for each family over all tested parameter combinations. All Methods (Max): result of taking the most accurate alignment over AMPS (Max) and alignments by all other methods.
From: OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy
Methods | Percentage Identity Range | Overall | ||||
|---|---|---|---|---|---|---|
|  | 0–10 | 10–20 | 20–30 | 30–50 | 50–100 |  |
AMPS (Opt) | 22.17 | 60.25 | 81.27 | 92.33 | 98.93 | 89.85 |
AMPS (Max) | 47.41 | 75.15 | 89.29 | 95.96 | 99.38 | 93.85 |
All Methods (Max) | 52.48 | 77.75 | 90.83 | 96.41 | 99.43 | 94.52 |