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Table 13 Consensus POPPs for the anchor families of each superfamily

From: LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles

Group

SF

Anchor Family Consensus POPP

1

4

+E, +G, +EG, +GE, +GG, +KG, +QE, +RK, +GGE, +KGG

1

6

+E, +G, +DE, +EG, +ES, +GG, +GQ, +RE, +RK, +ARE, +DES, +REG

2

1

+G, -L, +EK, +GG, +GT, +EKL, +IKE, +KEK, +KIK, +KKG, +KLP, +LPG

2

3

-F, -I, -L, -R, -W, +DK, +EK, +KK, +KL, +LP, +TH, +EKK, +KEK, +KLP, +LPG

2

8

+EK, +SS, +EKI, +KEK, +KIK, +SSS

2

9

-F, +G, -I, -L, -V, +AG, +EK, +GG, +GH, +GT, +TA, +TG, +GGT, +GTG, +TAG, +TGG

2

10

-F, +G, -I, +AG, +EK, +GG, +GQ, +KE, +SS, +EKL, +GAG, +IKE, +KEK, +KLP, +LPG, +SSS

3

2

+A, -C, +E, -F, -I, +K, -L, -P, +AE, +AK, +EK, +ET, +GE, +GK, +KE, +AAE, +AKD, +EKA

3

5

+A, -I, +K, -L, -P, +Q, +T, -V, +AA, +AQ, +EK, +KE, +KT, +QA, +QQ, +QS, +QT, +TQ, +AAK, +AQA, +EKT, +QAA, +TQQ

6

7

+A, -F, -L, +AA, +AE, +MQ, +QS, +VA, +AAA, +GVA, +QSA, +SAA

Lea5

299

+A, +R, +S, +AM, +GA, +GY, +RP, +SF, +SS, +YS

Lea14

297

+D, -R, +AS, +IP, +KV, +VS, +TIP

  1. Clusters, families and superfamilies closely mirror the structure of the LEA Groups, with the exception of Group 4 and Group 5. Against each LEA Group are listed the superfamilies that contain proteins from that Group (column 2) and the peptides forming the consensus POPP of the anchor (i.e. most typical) family in the superfamily. '+' before a peptide indicates significant over-representation; '-' indicates significant under-representation.