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Table 5 Amino acid coordination numbers and solvent accesibilities

From: Amino acid empirical contact energy definitions for fold recognition in the space of contact maps

Residue

coord. n.

a m (Ã…2)

σ a (Å2)

CYS

7

6.683

10.044

MET

8

13.818

15.638

PHE

9

12.747

14.597

ILE

8

9.487

13.742

LEU

8

10.454

12.840

VAL

7

8.523

10.375

TRP

10

15.233

16.309

TYR

9

16.430

14.349

ALA

5

9.865

10.059

GLY

4

8.675

7.659

THR

6

14.775

10.542

SER

5

13.687

9.927

ASN

7

19.319

12.195

GLN

7

22.667

13.855

GLU

7

23.294

12.322

ASP

6

17.791

10.786

HIS

8

19.122

14.963

ARG

9

31.045

17.145

LYS

8

33.329

13.796

PRO

6

17.674

12.097

  1. Coordination numbers with contact definition SC+CA with a 1.0 Å cutoff and solvent accessibility values. a m is the mean accessibility and σ a is the accessibility's standard deviation estimated for each amino acid type. a m and σ a values have been obtained from the file EVAACC.ACC from program WHATIF.
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BMC Bioinformatics

ISSN: 1471-2105

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