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Table 1 Number of Genes with Significant Differences between Tumor and Normal Class in Various Cancer Types under the PPST and ABA tests and the parametric t-test (for comparison)

From: Tests for finding complex patterns of differential expression in cancers: towards individualized medicine

 

α = 0.1

α = 0.05

Data Set

PPST

ABA test (ABA/BAB)

PPST

ABA test (ABA/BAB)

parametric t α = 0.05 **

breast7

572

40/5

326

28/49

313

melanoma15

662

60/202

312

38/133

347

colon45

1788

55/153

1558

46/55

1378

ovarian16

3344

253/63

2060

189/22

1813

lymphoma18

2077

286/42

1114

194/30

1370

lung19

614

40/3

506

35/3

389

  1. *A = tumor sample group, B = normal sample group **pooled variance t