Table 1 Correspondence of external biological keywords and ProtoNet clusters.
From: A functional hierarchical organization of the protein sequence space
External Source | ProtoNet Mean Best CSa | Random Mean Best CS (std dev) | # KW |
|---|---|---|---|
InterPro | 0.835 | 0.026 (0.9*10-4) | 2034 |
GO molecular function | 0.588 | 0.024 (0.8*10-4) | 1220 |
SCOP family | 0.720 | 0.299 (0.8*10-4) | 742 |
SCOP superfamily | 0.654 | 0.260 (0.9*10-4) | 558 |
SCOP fold | 0.598 | 0.230 (1*10-4) | 408 |
ENZYME entry | 0.848 | 0.179 (0.7*10-4) | 1432 |
ENZYME sub-subclass | 0.517 | 0.053 (2*10-4) | 161 |
ENZYME subclass | 0.412 | 0.025 (4*10-4) | 56 |