Table 2 Correspondence of external biological keywords and ProtoNet clusters after and before compression.
From: A functional hierarchical organization of the protein sequence space
External Source | ProtoNet Mean CS (before compression)a | Random Mean CS (before compression) |
|---|---|---|
InterPro all | 0.808 (0.835) | 0.025 (0.026) |
GO molecular function | 0.558 (0.588) | 0.020 (0.024) |
SCOP family | 0.702 (0.720) | 0.124 (0.299) |
SCOP superfamily | 0.635 (0.654) | 0.116 (0.260) |
SCOP fold | 0.580 (0.598) | 0.107 (0.230) |
ENZYME entry | 0.643 (0.848) | 0.090 (0.179) |
ENZYME sub-subclass | 0.471 (0.517) | 0.036 (0.053) |
ENZYME subclass | 0.371 (0.412) | 0.018 (0.025) |