Table 2 Substitution rates derived from concatenated alignments. Results derived from concatenated alignments from the same datasets as in Table 1 are shown. Sampling error, in parentheses, was estimated using the bootstrap method described in the Implementation section.
From: FRAGS: estimation of coding sequence substitution rates from fragmentary data
Data Set | Codons | Codon identity | K a | K s | K a /K s |
|---|---|---|---|---|---|
BES (quality filtered) | 19490 | 0.959 | 0.012 (0.001) | 0.033 (0.002) | 0.374 (0.04) |
BES (unfiltered) | 45702 | 0.935 | 0.022 (0.001) | 0.046 (0.002) | 0.491 (0.02) |
Genbank CDSs | 26019 | 0.966 | 0.009 (0.001) | 0.020 (0.001) | 0.473 (0.05) |
Genbank ESTs | 125198 | 0.958 | 0.006 (0.0003) | 0.026 (0.001) | 0.235 (0.01) |