Figure 1
From: Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
Use of BBB to identify and correct small mis-aligned regions within alignments of large virus genomes. (a) Region of vaccinia virus (strain WR) and cowpox virus (strain Brighton Red) genomes aligned by DIALIGN2 (b) Manually corrected version of region shown in (a). Gaps and mismatched nucleotides are shown as red and navy blue boxes or bars in between the 2 sequences, respectively.