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Table 2 Correlation matrix of various phylogenetic motif parametersa

From: Predicting functional sites with an automated algorithm suitable for heterogeneous datasets

 

PSZ threshold

# phylogenetic motifs

# sequences

# phylogenetic motifs

0.15

  

# sequences

0.08

-0.07

 

MSA length

-0.32

0.68

0.00

  1. a A sequence window width of 5 is used for each of the above examples and gap range of {-1: -2}.