Table 1 Segmentation results obtained from MGA alignments and included in the MOSAIC database. For each segmentation result, the first column describes the species and genomes used for segmentation analyses; the number of compared strains is indicated between parentheses. Total loop sizes and loop number of each genome are entered in the same order as strain names, and separated by '+'. Coverage corresponds to the ratio between backbone size and total genome size of a strain; here the mean value for all compared strains is given in percents.
Compared genomes (numbers of strains) | Backbone size (Mb) | Cumulative loop size (kb) [Loop number] | Coverage (mean) |
|---|---|---|---|
Agrobacterium tumefaciens | |||
C58 Cereon circ X C58 Univ. Wash circ (2) | 2.09 | 751[24]+751[25] | 74 % |
C58 Cereon lin RC X C58 Univ. Wash lin (2) | 1.82 | 252[13]+253[13] | 88 % |
Bacillus anthracis | |||
Ames X Ames 'Ancestor' (2) | 3.93 | 528[26]+528[24] | 90 % |
Bacillus cereus | |||
ATCC14579 X ATCC10987 (2) | 4.02 | 1390[2878]+1203[2872] | 76 % |
Chlamydophila pneumoniae | |||
AR39 RC+TR X CWL029 X J138 X TW183 (4) | 1.22 | 10[13]+10[13]+7[11]+6[12] | 99% |
CWL029 X J138 X TW183 (3) | 1.21 | 15[14]+11[12]+10[13] | 99 % |
CWL029 X J138 (2) | 1.21 | 21[15]+17[14] | 99 % |
J138 X TW183 (2) | 1.22 | 9[9]+8[10] | 99 % |
CWL029 X TW183 (2) | 1.22 | 13[6]+9[6] | 99 % |
AR39 RC+TR X CWL029 (2) | 1.22 | 8[7]+8[7] | 99% |
Escherichia coli | |||
K-12 X Sakai X EDL933 X CFT073 (4) | 3.52 | 1119[848]+1978[830]+2008[830]+1711[811] | 68 % |
K-12 X Sakai X CFT073 (3) | 3.73 | 904[827]+1763[795]+1496[770] | 73 % |
Helicobacter pylori | |||
26695 X J99 (2) | 1.24 | 428[957]+403[967] | 75 % |
Listeria monocytogenes | |||
EGD X 4b F2365 (2) | 2.67 | 270[644]+230[638] | 92 % |
Mycobacterium tuberculosis | |||
CDC1551 X H37Rv (2) | 4.19 | 217[164]+225[162] | 95 % |
Staphylococcus aureus | |||
MW2 X MU50 X N315 (3) | 2.59 | 226[388]+283[382]+220[388] | 92 % |
Streptococcus agalactiae | |||
2603V/R X NEM316 (2) | 1.88 | 276[135]+327[132] | 86 % |
Streptococcus pneumoniae | |||
R6 X TIGR4 (2) | 1.91 | 128[282]+250[294] | 91 % |
Streptococcus pyogenes | |||
M1GAS X MGAS315 X MGAS8232 (3) | 1.62 | 235[275]+283[282]+277[282] | 86 % |
M1GAS X MGAS315 (2) | 1.64 | 210[191]+258[192] | 88 % |
M1GAS X MGAS8232 (2) | 1.65 | 206[225]+249[231] | 88 % |
Vibrio vulnificus | |||
YJ016 K2 X CMCP6 K2 TR (2) | 1.63 | 222[198]+210[199] | 89 % |
YJ016 K1 RC X CMCP6 K1 TR (2) | 2.73 | 628[340]+555[338] | 82% |