Figure 3
From: Differentiation of regions with atypical oligonucleotide composition in bacterial genomes
Curves of D:n0_4 mer, PS:n0_4 mer and OUV:n1_4 mer in a locus of the P. putida KT2440 genome covering two regions with atypical OU: rrnA-rrnA * gene cluster and a long multidomain gene PP0168 encoding the surface adhesion protein. Local OU patterns were analyzed in 5 kbp sliding windows with steps of 1 kbp. Curves are specified by a color code: blue for D, green for PS and brown for OUV. Protein coding genes are shown by red bars and genes for ribosomal RNAs are shown in black. The abscissa indicates the coordinates of the locus in the chromosome. The upper horizontal line shows the upper boundary of the 95% confidence interval of intragenomic deviation of D values. The lower horizontal line separates genes by their direction of transcription.