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Table 11 Closest neighbors of d 1hdoa_ (Biliverdin IX beta reductase) (c.2.1.2.26). For each method we report the top 33 neighbors and their distance/similarity.

From: The distance-profile representation and its application to detection of distantly related protein families

BLAST

PSIBLAST

FUGUE

DP-PSIBLAST

DP-FUGUE

c.2.1.2.26

1e-110

c.2.1.2.26

1e-120

c.2.1.2.26

62.720

c.2.1.2.26

0.0000

c.2.1.2.26

-

c.2.1.2.1

0.12

c.2.1.2.1

0.069

c.2.1.2.27

6.310

c.2.1.2.4

1.4380

c.2.1.2.14

102.46

c.69.1.1.3

0.73

c.69.1.1.3

0.34

c.2.1.3.5

6.270

d.108.1.1.1

1.5288

c.2.1.2.13

91.26

c.31.1.5.1

1.3

d.108.1.1.1

0.65

c.2.1.2.13

6.250

b.7.1.1.5

1.6281

c.2.1.2.18

90.81

d.108.1.1.1

1.3

c.31.1.5.1

1.1

c.2.1.2.7

5.810

b.82.2.2.1

1.6281

c.2.1.2.17

85.56

a.93.1.1.4

2.4

a.93.1.1.4

2.2

c.78.2.1.1

5.620

c.81.1.1.2

1.6326

c.2.1.2.23

84.11

c.1.2.4.6

3.7

c.4.1.2.2

2.5

c.2.1.2.16

5.570

c.2.1.2.3

1.6598

c.2.1.2.15

84.01

d.144.1.1.12

3.9

c.1.2.4.6

2.6

c.2.1.3.6

4.930

c.66.1.13.1

1.6834

c.2.1.2.7

80.02

d.127.1.1.4

5.2

d.144.1.1.12

3.6

c.23.5.1.1

4.740

c.2.1.2.5

1.6908

c.2.1.2.25

80.00

c.4.1.2.2

5.3

d.127.1.1.4

4.2

c.2.1.6.5

4.520

c.2.1.2.1

1.6957

c.2.1.2.19

73.76

c.37.1.8.1

6.1

c.37.1.8.1

4.8

c.2.1.6.6

4.410

c.69.1.1.1

1.7249

c.2.1.2.11

73.52

b.77.2.1.1

7.4

a.118.2.1.5

6.2

d.142.1.2.3

4.370

c.1.8.7.1

1.7272

c.2.1.2.8

72.24

c.3.1.2.7

7.9

a.104.1.1.4

6.3

c.2.1.2.9

4.330

c.55.7.1.3

1.7273

c.2.1.2.21

71.62

a.118.2.1.5

8.3

b.77.2.1.1

6.4

c.34.1.1.1

4.210

d.108.1.1.2

1.7273

c.2.1.2.16

69.59

d.126.1.3.1

10

a.79.1.1.1

6.7

c.4.1.2.2

4.200

c.69.1.1.2

1.7277

c.2.1.2.10

69.55

c.1.10.1.4

12

c.3.1.2.7

6.8

c.93.1.1.1

4.080

c.69.1.17.4

1.7374

c.2.1.6.12

69.55

a.104.1.1.4

15

c.60.1.3.1

7.5

c.2.1.5.2

3.970

c.69.1.2.1

1.7412

c.2.1.2.20

69.55

c.60.1.3.1

15

c.59.1.1.3

7.7

c.2.1.2.15

3.940

c.2.1.2.2

1.7443

c.2.1.2.24

69.55

a.56.1.1.3

16

c.1.10.1.4

7.8

c.3.1.2.2

3.910

c.69.1.2.2

1.7502

c.2.1.2.27

69.55

d.104.1.1.13

17

a.118.2.1.2

7.9

c.37.1.2.1

3.900

d.108.1.1.4

1.7548

c.2.1.2.9

69.16

d.15.9.1.1

18

d.126.1.3.1

8.0

c.37.1.8.4

3.890

b.93.1.1.1

1.7658

c.2.1.2.28

68.02

a.79.1.1.1

19

c.37.1.10.7

8.8

c.2.1.2.19

3.850

c.2.1.2.6

1.7731

c.2.1.2.2

63.80

b.60.1.1.7

19

c.31.1.3.3

8.9

a.146.1.1.1

3.820

e.6.1.1.2

1.7799

c.2.1.2.22

61.33

c.45.1.2.4

19

d.104.1.1.13

9.4

c.2.1.2.28

3.820

b.40.5.1.2

1.8001

c.2.1.6.3

51.80

b.1.1.5.24

20

c.45.1.2.4

11

c.3.1.5.14

3.770

c.69.1.1.4

1.8074

c.2.1.6.6

48.27

c.31.1.3.3

20

b.43.3.2.1

12

c.2.1.2.1

3.760

c.69.1.1.3

1.8135

c.2.1.5.7

45.83

e.28.1.1.1

20

c.93.1.1.10

12

c.2.1.2.17

3.750

c.78.1.1.6

1.8210

c.2.1.2.1

45.75

b.1.1.1.5

22

b.1.1.5.24

13

c.2.1.3.7

3.740

g.17.1.3.1

1.8259

c.2.1.5.9

42.88

c.59.1.1.3

22

d.15.9.1.1

13

d.95.1.1.1

3.700

a.138.1.3.5

1.8261

c.4.1.2.2

37.63

c.93.1.1.10

22

c.29.1.1.2

14

g.18.1.1.12

3.700

a.144.1.1.2

1.8261

c.3.1.2.3

37.57

e.29.1.1.1

22

c.93.1.1.1

14

c.2.1.9.1

3.680

c.31.1.2.1

1.8261

c.3.1.4.1

37.09

b.60.1.1.4

23

e.29.1.1.1

14

c.68.1.3.1

3.650

c.31.1.5.1

1.8261

c.2.1.3.

36.66

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