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Table 5 Comparison between PSIBLAST4 (PSIBLAST with 4 iterations) and DP-PSIBLAST (Ï„' = 10, L1, prob) based on the training set. The normalized indices (in percentages) are given in parentheses.

From: The distance-profile representation and its application to detection of distantly related protein families

Index

PSIBLAST4

DP-PSIBLAST

ROC1-S

279 (30.68)

339 (35.16)

ROC1-F

279 (25.12)

339 (28.86)

TSS

335 (34.54)

462 (39.63)

TFF

409 (28.81)

510 (33.06)

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BMC Bioinformatics

ISSN: 1471-2105

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