TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins

BMC Bioinformatics

Table 1 Sequence datasets used to generate training sets.

Training dataset	Sources	Initial number sequences	Sequences >120 AA	Size after redundancy removal
ntm	PDB-REPRDB [32]	3159	2290	1763
ahtm	Sanger all-alpha membrane datasets A, B and C [33]	189	166	132
bbtm	TC-DB [35], Uniprot [34] and PDB [5]	1126	1107	196

Three training datasets were generated using sequences from various sources. Datasets were filtered for sequences of <120 AA and clustered to remove redundancy.

ISSN: 1471-2105